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| 22. |  | CLARIGET, J.M.; QUINTANS, G.; BANCHERO, G.; ÁLVAREZ-OXILEY, A.; BENTANCUR, O.; LÓPEZ-MAZZ, C.R.; PÉREZ-CLARIGET, R Effects of rice bran and glycerin supplementation on metabolic and productive responses of beef cows. Revista Brasileira de Zootecnia vol.49 Viçosa 2020 Epub May 15, 2020. OPEN ACCESS. DOI: https://doi.org/10.37496/rbz4920190082 Article history: Received: June 21, 2019/ Accepted: January 19, 2020. Corresponding author: jclariget@inia.org.uy. http://orcid.org/0000-0002-1349-0622. We thank ANII for providing a scholarship POS_2011_1_3522 and FMV_3_2011_1_6713...| Biblioteca(s): INIA La Estanzuela; INIA Treinta y Tres. |
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| 23. | | ASTESSIANO, A.L.; PÉREZ-CLARIGET, R.; QUINTANS, G.; SOCA, A.; MEIKLE, A.; CROOKER, B.A.; CARRIQUIRY, M. Metabolic and endocrine profiles and hepatic gene expression in periparturient, grazing primiparous cows with different body reserves. Livestock Science, 2014, v.170, no. 1, p. 63-71 Article history: received 12 April 2014; received in revised form 3 October 2014; accepted 6 October 2014.| Biblioteca(s): INIA Treinta y Tres. |
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| 24. | | SOCA, P.; CARRIQUIRY, M.; QUINTANS, G.; LÓPEZ, C.; ESPASANDÍN, A.; TRUJILLO, A.I.; MARICHAL, M.DE J.; ASTESSIANO, A.L.; PÉREZ-CLARIGET, R. Empleo del flushing y destete temporario de forma táctica para mejorar indicadores reproductivos y concentración de preñez de vacas primíparas Capítulo 3. Alternativas de manejo nutricional, control del amamantamiento y tratamientos hormonales durante el posparto. In: QUINTANS, G.; VELAZCO, J.I.; ROIG, G. (Eds.). Seminario de actualización técnica: cría vacuna. Montevideo (Uruguay): INIA, 2008. p. 120-134 (INIA Serie Técnica ; 174)| Biblioteca(s): INIA Las Brujas; INIA Tacuarembó. |
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| 25. | | VIÑOLES, C.; BANCHERO, G.; QUINTANS, G.; PÉREZ-CLARIGET, R.; SOCA, P.; UNGERFELD, R.; BIELLI, A.; FERNÁNDEZ ABELLA, D.; FORMOSO, D.; PEREIRA MACHÍN, M.; MEIKLE, A. Estado actual de la investigación vinculada a la producción animal limpia, verde y ética en Uruguay.[State of the art of research on clean, green and ethical animal production in Uruguay]. Agrociencia Uruguay, 2009 v. 13, no. 3, p. 59-79, 2009.| Biblioteca(s): INIA La Estanzuela; INIA Treinta y Tres. |
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| 26. | | CARRIQUIRY, M.; ESPASANDÍN, A.; ASTESSIANO, A.L.; CASAL, A.; CLARAMUNT, M.; DO CARMO, M.; GUTIÉRREZ, V.; LAPORTA, J.; MEIKLE, A.; SCARLATO, S.; PÉREZ-CLARIGET, R.; TRUJILLO, A.; VIÑOLES, C.; SOCA, P. Oferta de forraje del campo natural y resultado productivo de los sistemas de cría vacuna del Uruguay: II. Respuesta metabólica y potencial productivo del ternero In: QUINTANS, G.; SCARSI, A. (Eds.). Seminario de actualización técnica: cría vacuna Montevideo (UY): INIA, 2013. p. 119-134 (INIA Serie Técnica; 208)| Biblioteca(s): INIA Las Brujas; INIA Tacuarembó; INIA Treinta y Tres. |
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 | Acceso al texto completo restringido a Biblioteca INIA Treinta y Tres. Por información adicional contacte bibliott@inia.org.uy. |
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Registro completo
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Biblioteca (s) : |
INIA Treinta y Tres. |
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Fecha actual : |
21/02/2014 |
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Actualizado : |
13/09/2018 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Circulación / Nivel : |
Internacional - A |
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Autor : |
NOYES, N.R.; WEINROTH, M.E.; PARKER, J.K.; DEAN, C.J.; LAKIN, S.M.; RAYMOND, R.A.; ROVIRA, P.J.; DOSTER, E.; ABDO, Z.; MARTIN, J.N.; JONES, K.L.; RUIZ, J.; BOUCHER, C.A.; BELK, K.E.; MORLEY, P.S. |
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Afiliación : |
NOELLE R. NOYES; MAGGIE E. WEINROTH; JENNIFER K. PARKER; CHRIS J. DEAN; STEVEN M. LAKIN; ROBERT A. RAYMOND; PABLO JUAN ROVIRA SANZ, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; ENRIQUE DOSTER; ZAID ABDO; JENNIFER N. MARTIN; KENNETH L. JONES; JAIME RUIZ; CHRISTINA A. BOUCHER; KEITH E. BELK; PAUL S. MORLEY. |
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Título : |
Enrichment allows identification of diverse, rate elements in metagenomic resistome-virulome sequencing. |
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Fecha de publicación : |
2017 |
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Fuente / Imprenta : |
Microbiome, 2017, 5, p. 142 |
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Páginas : |
13 p. |
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DOI : |
10.1186/s40168-017-0361-8 |
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Idioma : |
Inglés |
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Notas : |
Article History: Received: 29 May 2017, Accepted: 5 October 2017, Published: 17 October 2017 |
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Contenido : |
Background: Shotgun metagenomic sequencing is increasingly utilized as a tool to evaluate ecological-level dynamics of antimicrobial resistance and virulence, in conjunction with microbiome analysis. Interest in use of this method for environmental surveillance of antimicrobial resistance and pathogenic microorganisms is also increasing. In published metagenomic datasets, the total of all resistance- and virulence-related sequences accounts for < 1% of all sequenced DNA, leading to imitations in detection of low-abundance resistome-virulome elements. This study describes the extent and composition of the low-abundance portion of the resistome-virulome, using a bait-capture and enrichment system that incorporates unique molecular indices to count DNA molecules and correct for enrichment bias.
Results: The use of the bait-capture and enrichment system significantly increased on-target sequencing of the resistome-virulome, enabling detection of an additional 1441 gene accessions and revealing a low-abundance portion of the resistome-virulome that was more diverse and compositionally different than that detected by more traditional
metagenomic assays. The low-abundance portion of the resistome-virulome also contained resistance genes with public health importance, such as extended-spectrum betalactamases, that were not detected using traditional shotgun metagenomic sequencing. In addition, the use of the bait-capture and enrichment system enabled identification of rare resistance gene haplotypes that were used to discriminate between sample origins.
Conclusions: These results demonstrate that the rare resistome-virulome contains valuable and unique information that can be utilized for both surveillance and population genetic investigations of resistance. Access to the rare resistomevirulome using the bait-capture and enrichment system validated in this study can greatly advance our understanding of
microbiome-resistome dynamics. MenosBackground: Shotgun metagenomic sequencing is increasingly utilized as a tool to evaluate ecological-level dynamics of antimicrobial resistance and virulence, in conjunction with microbiome analysis. Interest in use of this method for environmental surveillance of antimicrobial resistance and pathogenic microorganisms is also increasing. In published metagenomic datasets, the total of all resistance- and virulence-related sequences accounts for < 1% of all sequenced DNA, leading to imitations in detection of low-abundance resistome-virulome elements. This study describes the extent and composition of the low-abundance portion of the resistome-virulome, using a bait-capture and enrichment system that incorporates unique molecular indices to count DNA molecules and correct for enrichment bias.
Results: The use of the bait-capture and enrichment system significantly increased on-target sequencing of the resistome-virulome, enabling detection of an additional 1441 gene accessions and revealing a low-abundance portion of the resistome-virulome that was more diverse and compositionally different than that detected by more traditional
metagenomic assays. The low-abundance portion of the resistome-virulome also contained resistance genes with public health importance, such as extended-spectrum betalactamases, that were not detected using traditional shotgun metagenomic sequencing. In addition, the use of the bait-capture and enrichment system enabled identification of rare resistan... Presentar Todo |
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Palabras claves : |
ANTIMICROBIAL RESISTANCE; METAGENÓMICA; MICROBIAL ECOLOGY; MOLECULAR ENRICHMENT; RARE MICROBIOME; RESISTOME. |
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Thesagro : |
ANALISIS BIOLOGICO; ECOLOGIA MICROBIANA; RESISTENCIA A AGENTES DANINOS. |
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Asunto categoría : |
U30 Métodos de investigación |
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Marc : |
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001 1032862
005 2018-09-13
008 2017 bl uuuu u00u1 u #d
024 7 $a10.1186/s40168-017-0361-8$2DOI
100 1 $aNOYES, N.R.
245 $aEnrichment allows identification of diverse, rate elements in metagenomic resistome-virulome sequencing.$h[electronic resource]
260 $c2017
300 $a13 p.
500 $aArticle History: Received: 29 May 2017, Accepted: 5 October 2017, Published: 17 October 2017
520 $aBackground: Shotgun metagenomic sequencing is increasingly utilized as a tool to evaluate ecological-level dynamics of antimicrobial resistance and virulence, in conjunction with microbiome analysis. Interest in use of this method for environmental surveillance of antimicrobial resistance and pathogenic microorganisms is also increasing. In published metagenomic datasets, the total of all resistance- and virulence-related sequences accounts for < 1% of all sequenced DNA, leading to imitations in detection of low-abundance resistome-virulome elements. This study describes the extent and composition of the low-abundance portion of the resistome-virulome, using a bait-capture and enrichment system that incorporates unique molecular indices to count DNA molecules and correct for enrichment bias. Results: The use of the bait-capture and enrichment system significantly increased on-target sequencing of the resistome-virulome, enabling detection of an additional 1441 gene accessions and revealing a low-abundance portion of the resistome-virulome that was more diverse and compositionally different than that detected by more traditional metagenomic assays. The low-abundance portion of the resistome-virulome also contained resistance genes with public health importance, such as extended-spectrum betalactamases, that were not detected using traditional shotgun metagenomic sequencing. In addition, the use of the bait-capture and enrichment system enabled identification of rare resistance gene haplotypes that were used to discriminate between sample origins. Conclusions: These results demonstrate that the rare resistome-virulome contains valuable and unique information that can be utilized for both surveillance and population genetic investigations of resistance. Access to the rare resistomevirulome using the bait-capture and enrichment system validated in this study can greatly advance our understanding of microbiome-resistome dynamics.
650 $aANALISIS BIOLOGICO
650 $aECOLOGIA MICROBIANA
650 $aRESISTENCIA A AGENTES DANINOS
653 $aANTIMICROBIAL RESISTANCE
653 $aMETAGENÓMICA
653 $aMICROBIAL ECOLOGY
653 $aMOLECULAR ENRICHMENT
653 $aRARE MICROBIOME
653 $aRESISTOME
700 1 $aWEINROTH, M.E.
700 1 $aPARKER, J.K.
700 1 $aDEAN, C.J.
700 1 $aLAKIN, S.M.
700 1 $aRAYMOND, R.A.
700 1 $aROVIRA, P.J.
700 1 $aDOSTER, E.
700 1 $aABDO, Z.
700 1 $aMARTIN, J.N.
700 1 $aJONES, K.L.
700 1 $aRUIZ, J.
700 1 $aBOUCHER, C.A.
700 1 $aBELK, K.E.
700 1 $aMORLEY, P.S.
773 $tMicrobiome, 2017, 5, p. 142
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